PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g23100.2
Common NameLR48_Vigan02g048400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 136aa    MW: 15234.3 Da    PI: 10.2529
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g23100.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.7e-194191255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr+++ +g+++AeIrdp+     +r++lg+f+++ +Aaka++ a+ k++g
  Vang06g23100.2 41 RYRGVRRRP-WGKFAAEIRDPTRK--GTRVWLGTFDSEIDAAKAYDCAAFKMRG 91
                    8********.**********8542..4**********99*************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.12E-284099No hitNo description
SMARTSM003804.6E-3541105IPR001471AP2/ERF domain
PfamPF008471.4E-134191IPR001471AP2/ERF domain
PROSITE profilePS5103224.3164199IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-3141100IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-2341101IPR016177DNA-binding domain
PRINTSPR003672.1E-134253IPR001471AP2/ERF domain
PRINTSPR003672.1E-1381101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MNSTSTSTIS IPLNKCNSPE PLASSESQEK AKKAEYDVGK RYRGVRRRPW GKFAAEIRDP  60
TRKGTRVWLG TFDSEIDAAK AYDCAAFKMR GQKAILNFPL EAGEYDPKPN TCGRKRRRES  120
LQLELPQVHL HHGVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2939100364ATERF1
3gcc_A5e-2939100364ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113117RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145470.13e-80hypothetical protein PHAVU_007G241800g
SwissprotQ9LY055e-42EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLA0A0L9TVX35e-99A0A0L9TVX3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3STW25e-99A0A0S3STW2_PHAAN; Uncharacterized protein
STRINGGLYMA20G16920.15e-69(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.11e-42ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]